RAJNEESH

EXECUTIVE SUMMARY

• Data Analyst and Bioinformatics Scientist with ~8 years experience.
• Experienced in Next-gen sequencing/single cell data analysis and integrative biology.
• Project-oriented programmer (Python, shell scripting, R)
• Efficient research team coordinator with collaborative excellence.
• Trained 20+ research professionals, working in US-based companies.

EDUCATION

• Ph.D. Bioinformatics (Indiana University, USA)
• M.Sc. Microbiology (Banaras Hindu University, India)
• B.Sc. Botany, Chemistry, Microbiology (Banaras Hindu University, India)

Research Summary Projects Conferences

Research Summary

20

Publication

Please visit my Google Scholar or Pubmed webpage
+ PhD Thesis

15

Conferences

Please vist my Conference page below.

4

Acheivements & Awards

1. John R. Gibbs Scholarship – 2015, SOIC, IUPUI (USA)
2. Student and Trainee Travel Award – 2013, ICIBM (USA)
3. GATE -2012 (All India Rank – 176)
4. Summer Research Fellowship – 2009, IASc-INSA-NASI (INDIA)

1

Patent

Protein Biomarkers for Leptospirosis.
Inventors: Rajneesh Srivastava, Sandipan Ray, Sanjeeva Srivastava.
Application Number: 1907/MUM/2012

Computational skills

1

Data processing and Analytics

Genomic Toolkits:
FastQC, Fastx, SRA, Homer, Samtools, Bamtools, bedtools, vcftools, gtftools, MEME-suite, Bowtie, Tophat, Hisat, STAR, Graphmap, Minimap, Cufflinks, Sailfish, StringTie, Seurat
Pipelines:
GATK, Galaxy, MeRan, Custom pipeline
Data Visualization:
UCSC, IGV, PyMol, Cytoscape, Cluster 3.0, R, Python etc
Data Analysis:
ChIP-seq, CLIP-seq, ATAC-seq, DHS-seq, Ribo-seq, Bisulfite-seq, Short and long read -seq (Illumina, ONT, Pacbio), scRNA-seq, PhastCons, GWAS, SNP, Microarray
Data Mining:
HBM, GTEx, TCGA, HPA, String, BioGrid, Ensembl, PubMed, GEO, SRA, UCSC, NCBI, MirBase

2

Programming (scripting)

R-scripting, Python, Unix - bash scripting and Command line, cluster computing (AWS)
Pipeline designing and building

Experimental skills

1

Molecular biology

DNA/RNA/Protein isolation and estimation, PCR, SDS-PAGE, GSH-assay, hepatocytes culture, Western Blotting and fluorescence microscopy,

2

Proteomics

Serum protein extraction, Gel electrophoresis (SDS, 2D and DIGE), Western Blotting, ELISA.

3

Microbiology

Microbial culture, Gram staining, PCR, Latex agglutination test, Antibiotic sensitivity test. Isolation of bacterial colonies from clinical samples (CSF, Blood, Stool, Urine)